Mushroom Gruyere Cottage Cheese Egg Muffins
We’re in our savory breakfast era, and these Mushroom Gruyere Cottage Cheese Egg Muffins are one of our favorite things to keep on hand lately. They’re high protein, wildly flavorful, and feel a little fancy without being a whole production.
Think cozy mushrooms sautéed with garlic, nutty gruyere cheese, and whipped cottage cheese all blended into silky egg bites. These are tender and custardy, not rubbery or dry — thanks to the water bath and the secret sauce (literally): whipped cottage cheese.
This recipe is part of our egg muffin series (see: Pepperoni Pizza Egg Muffins), and it’s one of the most low-effort, high-payoff breakfast options in our rotation right now.

A Cozy Combo That Just Makes Sense
We’re not usually the kind of people to say something is elevated (😅), but mushroom and gruyere just are. Earthy and nutty, rich without being too much, and totally satisfying with your morning coffee.
The mushrooms get sautéed first with a little garlic and olive oil — this is key. Cooking them down keeps them from getting soggy in the muffins, and adds that deep umami flavor that makes these hit.
Whipped cottage cheese blends with the eggs to make everything silky and smooth. And if you’ve ever tried those famous sous-vide egg bites from a certain coffee chain… yeah, this is that texture, but made at home.
Here’s What You’ll Need 🍳🧅🧀
- Eggs
- Whipped cottage cheese
- Gruyere, shredded
- Mushrooms (cremini or baby bella are great)
- Salt + pepper
You’ll start by sautéing the mushrooms and garlic until everything’s golden and fragrant. Then blend the eggs and cottage cheese until smooth, stir in the shredded cheese and mushrooms, and pour into your muffin tin.
To get that custardy, Starbucks-style texture, we bake them in a water bath. It’s one extra step — but worth it.
Not Just for Breakfast
These are technically breakfast… but they also make a really good midday snack or part of an easy lunch. Pair two of them with toast or a handful of greens and you’re good to go.
We’ve even eaten them cold (don’t judge), and they hold up surprisingly well. Creamy, savory, and not dry at all — even straight from the fridge.
Why Cottage Cheese Egg Muffins Work for Meal Prep
If you’re looking for something that checks the boxes — high in protein, easy to make ahead, doesn’t taste like a compromise — this is it.
🥚 Storage Tips:
- Keep in an airtight container in the fridge for up to 4 days
- Reheat in the microwave for 20–30 seconds
- Or warm in a low oven if you prefer that texture
Switch Things Up
You can absolutely make these your own. The cottage cheese and egg base is super versatile — here are a few swaps we’ve tried and liked:
- Add greens – Stir in some wilted spinach or chopped kale
- Swap cheeses – Gruyere adds a nice nutty flavor, but sharp cheddar or fontina would also be great
- Extra heat – Add a pinch of red pepper flakes if you like a little spice
- No mushrooms? – Roasted red peppers or sautéed zucchini are solid backups
More Cottage Cheese Breakfast Ideas to Keep on Deck
We’re building out a whole collection of cottage cheese breakfast recipes, because… they just work. Here are a few other favorites if you want to keep the protein-packed mornings rolling:
- Pepperoni Pizza Cottage Cheese Egg Muffins
- Cherry Cottage Cheese Smoothie
- Cottage Cheese Zucchini Bread
- Cottage Cheese Carrot Cake Muffins
We’re constantly adding more, so definitely check back (or hit us up with your flavor requests — we’re listening 👀).

Don’t Sleep on These
If you’re in your egg muffin era, or you’re just looking for a savory, satisfying breakfast that doesn’t feel like a chore to make, these Mushroom Gruyere Cottage Cheese Egg Muffins need to be in your lineup.
They’re creamy, full of flavor, and pack 12g+ of protein per muffin, depending on your mix-ins. We love them as a quiet little moment of luxury on a weekday morning — paired with coffee and a minute of peace.
Make them once, and we have a feeling they’ll end up in your Sunday prep pretty regularly.
PrintCottage Cheese Mushroom Gruyere Egg Muffins
- Prep Time: 5 minutes
- Cook Time: 20 minutes
- Total Time: 25 minutes
- Yield: 12 1x
- Category: Breakfast
- Method: Oven
- Cuisine: American
Ingredients
10 eggs
1 cup cottage cheese
1/2 teaspoon sea salt
1/2 teaspoon pepper
1/2 cup gruyere cheese
1/2 cup baby portobello mushrooms, sliced or chopped
1 teaspoon fresh thyme, minced (optional)
Instructions
- Preheat the oven to 320º. Lightly spray silicone muffin trays with cooking oil. You’ll also need a rimmed baking sheet and boiling water, because we’re doing a water bath!
- Add eggs, cottage cheese, salt, and pepper to a blender. Blend until completely smooth.
- Place the silicone muffin tray onto your baking sheet – this will save you a headache when you try to transfer to the oven!
- Equally distribute gruyere and sliced mushrooms between the muffin cups.
- Gently pour the egg mixture into the muffin cups until almost full. Place the baking sheet into the oven and carefully pour hot water into the baking sheet (not the egg muffin themselves!).
- Bake 25 minutes and remove from the oven. Cool 5 minutes and enjoy!
