Pepperoni Pizza Cottage Cheese Egg Muffins
There’s something about having breakfast handled before you even open your eyes that just makes life easier. These Pepperoni Pizza Cottage Cheese Egg Muffins are high-protein, meal-prep friendly, and surprisingly kid-approved. They’re blended smooth and baked low and slow in a water bath for that soft, custardy texture — kind of like Starbucks egg bites, but with serious pizza energy.
No rubbery edges. No weird texture. Just creamy, cheesy, pepperoni-filled muffins that somehow make mornings feel a little more fun.

Pizza Vibes for Breakfast? Yes.
These egg muffins walk the line between cozy and convenient. You’ve got melty mozzarella, crispy little pieces of pepperoni, and a warm hit of oregano to seal the deal. It’s like a mini deep dish moment… made in a muffin tin.
Everything blends together (yes, even the cottage cheese) for a silky-smooth base. Baking them in a water bath keeps the texture tender — like tiny quiches that happen to taste like pizza.
You’ll be tempted to eat one right out of the oven. We’ve done the same.
What’s in These Muffins?
It’s a short list — pantry-friendly and endlessly adaptable:
- Eggs
- Whipped cottage cheese
- Shredded mozzarella
- Mini pepperoni (or chopped slices)
- Dried oregano or Italian seasoning
- Salt + pepper
That’s it. You can absolutely riff on the formula — add diced bell peppers, chopped spinach, or a spoonful of marinara. But the base? Simple and very, very solid.
How to Get That Silky Starbucks Texture
If you’ve ever had those Starbucks egg bites, you know the deal: soft, pillowy, almost custard-like.
Here’s how we get that at home:
- Blend everything – Eggs, whipped cottage cheese, seasoning — blend until smooth and creamy. No lumps allowed.
- Use a water bath – Place your muffin tin in a larger baking dish, and pour hot water around it to insulate while baking.
- Low temp bake – 300°F for about 30 minutes. This gentle heat + moisture keeps the texture from turning weird.
The result is soft, creamy, almost soufflé-like muffins with just enough structure to grab and go.
Meal Prep Hero Status
These reheat like a dream — whether you’re in full prep mode or just trying to get out the door without skipping breakfast (again).
Here’s how to store them:
- 🧊 Fridge: Store in an airtight container for up to 5 days.
- 🔥 Reheat: Microwave for 20–30 seconds, or warm in the oven at 350°F for 5 minutes.
- ❄️ Freeze: Yep. Freeze in a single layer, then transfer to a bag. Reheat straight from frozen — they’ll still be great.
Great for workdays, school lunches, or even late-night snacking when you’re short on your daily protein goal.
Serve These With…
Honestly? They’re great on their own. But if you’re building a full breakfast, pair them with something fresh and fun like our Cottage Cheese Ranch Pasta Salad or grab a Cherry Cottage Cheese Smoothie for the road.

🙋♀️ FAQ
Can I make these cottage cheese egg muffins without pepperoni?
Totally. Swap the pepperoni for sautéed veggies like spinach, mushrooms, or red peppers. You can also go classic with just cheese and herbs.
Do I have to bake these in a water bath?
We highly recommend it! That’s what gives them the silky, custard-like texture (like Starbucks egg bites). No fancy tools — just a baking dish with hot water.
Can I freeze pepperoni pizza cottage cheese egg muffins?
Yes! Let them cool, then freeze in a single layer before transferring to a container or freezer bag. Reheat in the microwave or oven — super easy.
One to Keep in the Rotation
These Pepperoni Pizza Cottage Cheese Egg Muffins don’t just taste like a win — they are one. Kid-friendly, make-ahead friendly, protein-packed, and kind of fun in a way that makes mornings a little easier to handle.
Let us know if they make it into your breakfast rotation (or lunchbox, or snack drawer). 🧡
PrintPepperoni Pizza Cottage Cheese Egg Muffins
These high protein pepperoni pizza cottage cheese egg muffins are a killer make-ahead breakfast. The texture is just like the famous Starbucks egg bites!
- Prep Time: 5 minutes
- Cook Time: 25
- Total Time: 30 minutes
- Yield: 12 1x
- Category: Breakfast
- Method: Oven
- Cuisine: American
Ingredients
10 eggs
1 cup cottage cheese
1 teaspoon Italian seasoning
1/2 teaspoon sea salt
1/2 teaspoon pepper
1/2 cup mozzarella cheese
1/2 cup pepperoni, chopped
cooking spray
Instructions
- Preheat the oven to 320º. Lightly spray silicone muffin trays with cooking oil. You’ll also need a rimmed baking sheet and boiling water, because we’re doing a water bath!
- Add eggs, cottage cheese, Italian seasoning, salt, and pepper to a blender. Blend until completely smooth.
- Place the silicone muffin tray onto your baking sheet – this will save you a headache when you try to transfer to the oven!
- Equally distribute mozzarella and pepperoni between the muffin cups.
- Gently pour the egg mixture into the muffin cups until almost full. Place the baking sheet into the oven and carefully pour hot water into the baking sheet (not the egg muffin themselves!).
- Bake 25 minutes and remove from the oven. Cool 5 minutes and enjoy!
